2 papers
q-bio.QM2025
LiveProteinBench: A Contamination-Free Benchmark for Assessing Models' Specialized Capabilities in Protein Science
Dingyi Rong, Zijian Chen, Qi Jia +4
In contrast to their remarkable performance on general knowledge QA, the true abilities of Large Language Models (LLMs) in tasks demanding deep, specialized reasoning, such as in p…
cs.LG2025
EnerBridge-DPO: Energy-Guided Protein Inverse Folding with Markov Bridges and Direct Preference Optimization
Dingyi Rong, Haotian Lu, Wenzhuo Zheng +3
Designing protein sequences with optimal energetic stability is a key challenge in protein inverse folding, as current deep learning methods are primarily trained by maximizing seq…