367 citations · 432 across the 6 of their papers we have counts for
4 papers · 1 filter
Atmospheric reaction systems as null-models to identify structural traces of evolution in metabolism
Petter Holme, Mikael Huss, Sang Hoon Lee
The metabolism is the motor behind the biological complexity of an organism. One problem of characterizing its large-scale structure is that it is hard to know what to compare it t…
Comment on "Regularizing capacity of metabolic networks"
Petter Holme, Mikael Huss
In a recent paper, Marr, Muller-Linow and Hutt [Phys. Rev. E 75, 041917 (2007)] investigate an artificial dynamic system on metabolic networks. They find a less complex time evolut…
Role-similarity based functional prediction in networked systems: Application to the yeast proteome
Petter Holme, Mikael Huss
We propose a general method to predict functions of vertices where: 1. The wiring of the network is somehow related to the vertex functionality. 2. A fraction of the vertices are f…
Discovery and analysis of biochemical subnetwork hierarchies
Petter Holme, Mikael Huss
The representation of a biochemical network as a graph is the coarsest level of description in cellular biochemistry. By studying the network structure one can draw conclusions on…