9 citations · 11 across the 3 of their papers we have counts for
7 papers
Geometrical model for the native-state folds of proteins
Trinh X. Hoang, Antonio Trovato, Flavio Seno +2
We recently introduced a physical model [Hoang et al., P. Natl. Acad. Sci. USA (2004), Banavar et al., Phys. Rev. E (2004)] for proteins which incorporates, in an approximate manne…
A new perspective on the analysis of helix-helix packing preferences in globular proteins
A. Trovato, F. Seno
For many years it had been believed that steric compatibility of helix interfaces could be the source of the observed preference for particular angles between neighbouring helices…
Elucidation of the disulfide folding pathway of hirudin by a topology-based approach
C. Micheletti, V. De Filippis, A. Maritan +1
A theoretical model for the folding of proteins containing disulfide bonds is introduced. The model exploits the knowledge of the native state to favour the progressive establishme…
Geometrical aspects of protein folding
Jay Banavar, Amos Maritan, Cristian Micheletti +1
These lectures will address two questions. Is there a simple variational principle underlying the existence of secondary motifs in the native state of proteins? Is there a general…
Learning effective amino acid interactions through iterative stochastic techniques
Cristian Micheletti, Flavio Seno, Jayanth Banavar +1
The prediction of the three-dimensional structures of the native state of proteins from the sequences of their amino acids is one of the most important challenges in molecular biol…
Recurrent oligomers in proteins - an optimal scheme reconciling accurate and concise backbone representations in automated folding and design studies
Cristian Micheletti, Flavio Seno, Amos Maritan
A novel scheme is introduced to capture the spatial correlations of consecutive amino acids in naturally occurring proteins. This knowledge-based strategy is able to carry out opti…