34 citations · 141 across the 21 of their papers we have counts for
13 papers · 1 filter
Proteins -- a celebration of consilience
Tatjana Škrbić, Trinh Xuan Hoang, Achille Giacometti +2
Proteins are the common constituents of all living cells. They are molecular machines that interact with each other as well as with other cell products and carry out a dizzying arr…
Protein escape at the ribosomal exit tunnel: Effect of the tunnel shape
Phuong Thuy Bui, Trinh Xuan Hoang
We study the post-translational escape of nascent proteins at the ribosomal exit tunnel with the consideration of a real shape atomistic tunnel based on the Protein Data Bank (PDB)…
Protein escape at the ribosomal exit tunnel: Effects of native interactions, tunnel length and macromolecular crowding
Phuong Thuy Bui, Trinh Xuan Hoang
How fast a post-translational nascent protein escapes from the ribosomal exit tunnel is relevant to its folding and protection against aggregation. Here, by using Langevin molecula…
Sequence dependent aggregation of peptides and fibril formation
Nguyen Ba Hung, Duy-Manh Le, Trinh X. Hoang
Deciphering the links between amino acid sequence and amyloid fibril formation is key for understanding protein misfolding diseases. Here we use Monte Carlo simulations to study ag…
Folding and escape of nascent proteins at ribosomal exit tunnel
Bui Phuong Thuy, Trinh Xuan Hoang
We investigate the interplay between post-translational folding and escape of two small single-domain proteins at the ribosomal exit tunnel by using Langevin dynamics with coarse-g…
Structural motifs of biomolecules
Jayanth R. Banavar, Trinh X. Hoang, John H. Maddocks +4
Biomolecular structures are assemblies of emergent anisotropic building modules such as uniaxial helices or biaxial strands. We provide an approach to understanding a marginally co…