89 citations · 336 across the 25 of their papers we have counts for
4 papers · 1 filter
Statistical inference in partially observed branching processes with application to cell lineage tracking of in vivo hematopoiesis
Jason Xu, Samson Koelle, Peter Guttorp +4
Single-cell lineage tracking strategies enabled by recent experimental technologies have produced significant insights into cell fate decisions, but lack the quantitative framework…
Calculating higher-order moments of phylogenetic stochastic mapping summaries in linear time
Amrit Dhar, Vladimir N. Minin
Stochastic mapping is a simulation-based method for probabilistically mapping substitution histories onto phylogenies according to continuous-time Markov models of evolution. This…
Efficient data augmentation for fitting stochastic epidemic models to prevalence data
Jonathan Fintzi, Xiang Cui, Jon Wakefield +1
Stochastic epidemic models describe the dynamics of an epidemic as a disease spreads through a population. Typically, only a fraction of cases are observed at a set of discrete tim…
Birth/birth-death processes and their computable transition probabilities with biological applications
Lam Si Tung Ho, Jason Xu, Forrest W. Crawford +2
Birth-death processes track the size of a univariate population, but many biological systems involve interaction between populations, necessitating models for two or more populatio…