89 citations · 336 across the 25 of their papers we have counts for
27 papers
Incorporating testing volume into estimation of effective reproduction number dynamics
Isaac H. Goldstein, Jon Wakefield, Volodymyr M. Minin
Branching process inspired models are widely used to estimate the effective reproduction number -- a useful summary statistic describing an infectious disease outbreak -- using cou…
Statistical implications of relaxing the homogeneous mixing assumption in time series Susceptible-Infectious-Removed models
Luis D. J. Martinez Lomeli, Michelle N. Ngo, Jon Wakefield +2
Infectious disease epidemiologists routinely fit stochastic epidemic models to time series data to elucidate infectious disease dynamics, evaluate interventions, and forecast epide…
Optimal Experimental Design for Mathematical Models of Hematopoiesis
Luis Martinez Lomeli, Abdon Iniguez, Babak Shahbaba +2
The hematopoietic system has a highly regulated and complex structure in which cells are organized to successfully create and maintain new blood cells. Feedback regulation is cruci…
A linear noise approximation for stochastic epidemic models fit to partially observed incidence counts
Jonathan Fintzi, Jon Wakefield, Vladimir N. Minin
Stochastic epidemic models (SEMs) fit to incidence data are critical to elucidating outbreak dynamics, shaping response strategies, and preparing for future epidemics. SEMs typical…
A Bayesian Phylogenetic Hidden Markov Model for B Cell Receptor Sequence Analysis
Amrit Dhar, Duncan K. Ralph, Vladimir N. Minin +1
The human body is able to generate a diverse set of high affinity antibodies, the soluble form of B cell receptors (BCRs), that bind to and neutralize invading pathogens. The natur…
Estimating effective population size changes from preferentially sampled genetic sequences
Michael D. Karcher, Marc A. Suchard, Gytis Dudas +1
Coalescent theory combined with statistical modeling allows us to estimate effective population size fluctuations from molecular sequences of individuals sampled from a population…