104 citations · 105 across the 7 of their papers we have counts for
4 papers · 1 filter
PhysiBoSS-Models: A database for multiscale models
Vincent Noel, Marco Ruscone, Randy Heiland +5
PhysiBoSS is an open-source platform that integrates agent-based modeling of cell populations with intracellular stochastic Boolean networks, enabling multiscale simulations of com…
Building multiscale models with PhysiBoSS, an agent-based modeling tool
Marco Ruscone, Andrea Checcoli, Randy Heiland +4
Multiscale models provide a unique tool for studying complex processes that study events occurring at different scales across space and time. In the context of biological systems,…
BioSimulators: a central registry of simulation engines and services for recommending specific tools
Bilal Shaikh, Lucian P. Smith, Dan Vasilescu +68
Computational models have great potential to accelerate bioscience, bioengineering, and medicine. However, it remains challenging to reproduce and reuse simulations, in part, becau…
DeDaL: Cytoscape 3.0 app for producing and morphing data-driven and structure-driven network layouts
Urszula Czerwinska, Laurence Calzone, Emmanuel Barillot +1
Visualization and analysis of molecular profiling data together with biological networks are able to provide new mechanistical insights into biological functions. Currently, high-t…