1 citations · 1 across the 2 of their papers we have counts for
4 papers
Memory Matching Networks for Genomic Sequence Classification
Jack Lanchantin, Ritambhara Singh, Yanjun Qi
When analyzing the genome, researchers have discovered that proteins bind to DNA based on certain patterns of the DNA sequence known as "motifs". However, it is difficult to manual…
Deep Motif: Visualizing Genomic Sequence Classifications
Jack Lanchantin, Ritambhara Singh, Zeming Lin +1
This paper applies a deep convolutional/highway MLP framework to classify genomic sequences on the transcription factor binding site task. To make the model understandable, we prop…
MUST-CNN: A Multilayer Shift-and-Stitch Deep Convolutional Architecture for Sequence-based Protein Structure Prediction
Zeming Lin, Jack Lanchantin, Yanjun Qi
Predicting protein properties such as solvent accessibility and secondary structure from its primary amino acid sequence is an important task in bioinformatics. Recently, a few dee…
Cancer Diagnosis with QUIRE: QUadratic Interactions among infoRmative fEatures
Salim Chowdhury, Yanjun Qi, Alex Stewart +2
Responsible for many complex human diseases including cancers, disrupted or abnormal gene interactions can be identified through their expression changes correlating with the progr…