144 citations · 215 across the 9 of their papers we have counts for
5 papers · 1 filter
The inference of gene trees with species trees
Gergely J. Szöllosi, Eric Tannier, Vincent Daubin +1
Molecular phylogeny has focused mainly on improving models for the reconstruction of gene trees based on sequence alignments. Yet, most phylogeneticists seek to reveal the history…
The genome of the medieval Black Death agent (extended abstract)
Ashok Rajaraman, Eric Tannier, Cedric Chauve
The genome of a 650 year old Yersinia pestis bacteria, responsible for the medieval Black Death, was recently sequenced and assembled into 2,105 contigs from the main chromosome. A…
Lateral Gene Transfer, Rearrangement and Reconciliation
Murray Patterson, Gergely J Szöllősi, Vincent Daubin +1
Background. Models of ancestral gene order reconstruction have progressively integrated different evolutionary patterns and processes such as unequal gene content, gene duplication…
Efficient Exploration of the Space of Reconciled Gene Trees
Gergely J. Szöllősi, Wojciech Rosikiewicz, Bastien Boussau +2
Gene trees record the combination of gene level events, such as duplication, transfer and loss, and species level events, such as speciation and extinction. Gene tree-species tree…
On sampling SCJ rearrangement scenarios
Istvan Miklos, Sandor Z. Kiss, Eric Tannier
The Single Cut or Join (SCJ) operation on genomes, generalizing chromosome evolution by fusions and fissions, is the computationally simplest known model of genome rearrangement. W…