144 citations · 215 across the 9 of their papers we have counts for
9 papers
Gene tree reconciliation including transfers with replacement is hard and FPT
Damir Hasic, Eric Tannier
Phylogenetic trees illustrate the evolutionary history of genes and species. In most cases, although genes evolve along with the species they belong to, a species tree and gene tre…
Gene tree species tree reconciliation with gene conversion
Damir Hasic, Eric Tannier
Gene tree/species tree reconciliation is a recent decisive progress in phylo-genetic methods, accounting for the possible differences between gene histories and species histories.…
Genome-scale phylogenetic analysis finds extensive gene transfer among Fungi
Gergely J. Szöllősi, Adrián Arellano Davín, Eric Tannier +2
Although the role of lateral gene transfer is well recognized in the evolution of bacteria, it is generally assumed that it has had less influence among eukaryotes. To explore this…
The inference of gene trees with species trees
Gergely J. Szöllosi, Eric Tannier, Vincent Daubin +1
Molecular phylogeny has focused mainly on improving models for the reconstruction of gene trees based on sequence alignments. Yet, most phylogeneticists seek to reveal the history…
The genome of the medieval Black Death agent (extended abstract)
Ashok Rajaraman, Eric Tannier, Cedric Chauve
The genome of a 650 year old Yersinia pestis bacteria, responsible for the medieval Black Death, was recently sequenced and assembled into 2,105 contigs from the main chromosome. A…
Lateral Gene Transfer, Rearrangement and Reconciliation
Murray Patterson, Gergely J Szöllősi, Vincent Daubin +1
Background. Models of ancestral gene order reconstruction have progressively integrated different evolutionary patterns and processes such as unequal gene content, gene duplication…
Efficient Exploration of the Space of Reconciled Gene Trees
Gergely J. Szöllősi, Wojciech Rosikiewicz, Bastien Boussau +2
Gene trees record the combination of gene level events, such as duplication, transfer and loss, and species level events, such as speciation and extinction. Gene tree-species tree…
On sampling SCJ rearrangement scenarios
Istvan Miklos, Sandor Z. Kiss, Eric Tannier
The Single Cut or Join (SCJ) operation on genomes, generalizing chromosome evolution by fusions and fissions, is the computationally simplest known model of genome rearrangement. W…
Lateral Gene Transfer from the Dead
Gergely J Szöllösi, Eric Tannier, Nicolas Lartillot +1
In phylogenetic studies, the evolution of molecular sequences is assumed to have taken place along the phylogeny traced by the ancestors of extant species. In the presence of later…