71 citations · 185 across the 7 of their papers we have counts for
7 papers
FPGA implementation of a 32x32 autocorrelator array for analysis of fast image series
Jan Buchholz, Jan Wolfgang Krieger, Gábor Mocsár +5
With the evolving technology in CMOS integration, new classes of 2D-imaging detectors have recently become available. In particular, single photon avalanche diode (SPAD) arrays all…
How proteins squeeze through polymer networks: a Cartesian lattice study
Annika Wedemeier, Holger Merlitz, Chen-Xu Wu +1
In this paper a lattice model for the diffusional transport of particles in the interphase cell nucleus is proposed. The dynamic behaviour of single chains on the lattice is invest…
Modelling diffusional transport in the interphase cell nucleus
Annika Wedemeier, Holger Merlitz, Chen-Xu Wu +1
In this paper a lattice model for diffusional transport of particles in the interphase cell nucleus is proposed. Dense networks of chromatin fibers are created by three different m…
Facilitated diffusion of DNA-binding proteins: Simulation of large systems
Holger Merlitz, Konstantin V. Klenin, Chen-Xu Wu +1
The recently introduced method of excess collisions (MEC) is modified to estimate diffusion-controlled reaction times inside systems of arbitrary size. The resulting MEC-E equation…
Facilitated diffusion of DNA-binding proteins: Efficient simulation with the method of excess collisions (MEC)
Holger Merlitz, Konstantin V. Klenin, Chen-Xu Wu +1
In this paper, a new method to efficiently simulate diffusion controlled second order chemical reactions is derived and applied to site-specific DNA-binding proteins. The protein e…
In silicio stretching of chromatin
Frank Aumann, Filip Lankas, Maiwen Caudron +1
We present Monte-Carlo (MC) simulations of the stretching of a single 30 nm chromatin fiber. The model approximates the DNA by a flexible polymer chain with Debye-Hückel electrosta…