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q-bio.GN2021
Analysing high-throughput sequencing data in Python with HTSeq 2.0
Givanna H Putri, Simon Anders, Paul Theodor Pyl +2
Summary: HTSeq 2.0 provides a more extensive API including a new representation for sparse genomic data, enhancements in htseq-count to suit single cell omics, a new script for dat…
q-bio.GN2013★ 1.2k cited
Count-based differential expression analysis of RNA sequencing data using R and Bioconductor
Simon Anders, Davis J. McCarthy, Yunshen Chen +4
RNA sequencing (RNA-seq) has been rapidly adopted for the profiling of transcriptomes in many areas of biology, including studies into gene regulation, development and disease. Of…