84 citations · 94 across the 6 of their papers we have counts for
3 papers · 1 filter
Metagenomic Analysis using Phylogenetic Placement -- A Review of the First Decade
Lucas Czech, Alexandros Stamatakis, Micah Dunthorn +1
Phylogenetic placement refers to a family of tools and methods to analyze, visualize, and interpret the tsunami of metagenomic sequencing data generated by high-throughput sequenci…
Impacts of terraces on phylogenetic inference
Michael J Sanderson, Michelle M. McMahon, Alexandros Stamatakis +2
Terraces are potentially large sets of trees with precisely the same likelihood or parsimony score, which can be induced by missing sequences in partitioned multi-locus phylogeneti…
A format for phylogenetic placements
Frederick A. Matsen, Noah G. Hoffman, Aaron Gallagher +1
We have developed a unified format for phylogenetic placements, that is, mappings of environmental sequence data (e.g. short reads) into a phylogenetic tree. We are motivated to do…