84 citations · 94 across the 6 of their papers we have counts for
6 papers
Metagenomic Analysis using Phylogenetic Placement -- A Review of the First Decade
Lucas Czech, Alexandros Stamatakis, Micah Dunthorn +1
Phylogenetic placement refers to a family of tools and methods to analyze, visualize, and interpret the tsunami of metagenomic sequencing data generated by high-throughput sequenci…
ReStore: In-Memory REplicated STORagE for Rapid Recovery in Fault-Tolerant Algorithms
Lukas Hübner, Demian Hespe, Peter Sanders +1
Fault-tolerant distributed applications require mechanisms to recover data lost via a process failure. On modern cluster systems it is typically impractical to request replacement…
Impacts of terraces on phylogenetic inference
Michael J Sanderson, Michelle M. McMahon, Alexandros Stamatakis +2
Terraces are potentially large sets of trees with precisely the same likelihood or parsimony score, which can be induced by missing sequences in partitioned multi-locus phylogeneti…
Modelling ecological communities as if they were DNA
William D. Pearse, Andy Purvis, David B. Roy +1
Ecologists are interested in understanding and predicting how ecological communities change through time. While it might seem natural to measure this through changes in species' ab…
A format for phylogenetic placements
Frederick A. Matsen, Noah G. Hoffman, Aaron Gallagher +1
We have developed a unified format for phylogenetic placements, that is, mappings of environmental sequence data (e.g. short reads) into a phylogenetic tree. We are motivated to do…
Evolutionary Placement of Short Sequence Reads
S. A. Berger, A. Stamatakis
We present an Evolutionary Placement Algorithm (EPA) for the rapid assignment of sequence fragments (short reads) to branches of a given phylogenetic tree under the Maximum Likelih…