48 citations · 303 across the 26 of their papers we have counts for
5 papers · 1 filter
Diffusion Limits at Small Times for Coalescent Processes with Mutation and Selection
Philip A. Hanson, Paul A. Jenkins, Jere Koskela +1
The Ancestral Selection Graph (ASG) is an important genealogical process which extends the well-known Kingman coalescent to incorporate natural selection. We show that the number o…
KwARG: Parsimonious reconstruction of ancestral recombination graphs with recurrent mutation
Anastasia Ignatieva, Rune B. Lyngsø, Paul A. Jenkins +1
The reconstruction of possible histories given a sample of genetic data in the presence of recombination and recurrent mutation is a challenging problem, but can provide key insigh…
The computational cost of blocking for sampling discretely observed diffusions
Marcin Mider, Paul A. Jenkins, Murray Pollock +1
Many approaches for conducting Bayesian inference on discretely observed diffusions involve imputing diffusion bridges between observations. This can be computationally challenging…
Simple conditions for convergence of sequential Monte Carlo genealogies with applications
Suzie Brown, Paul A. Jenkins, Adam M. Johansen +1
We present simple conditions under which the limiting genealogical process associated with a class of interacting particle systems with non-neutral selection mechanisms, as the num…
Convergence of Likelihood Ratios and Estimators for Selection in non-neutral Wright-Fisher Diffusions
Jaromir Sant, Paul A. Jenkins, Jere Koskela +1
A number of discrete time, finite population size models in genetics describing the dynamics of allele frequencies are known to converge (subject to suitable scaling) to a diffusio…