48 citations · 303 across the 26 of their papers we have counts for
28 papers
EWF : simulating exact paths of the Wright--Fisher diffusion
Jaromir Sant, Paul A. Jenkins, Jere Koskela +1
The Wright--Fisher diffusion is important in population genetics in modelling the evolution of allele frequencies over time subject to the influence of biological phenomena such as…
An estimator for the recombination rate from a continuously observed diffusion of haplotype frequencies
Robert C. Griffiths, Paul A. Jenkins
Recombination is a fundamental evolutionary force, but it is difficult to quantify because the effect of a recombination event on patterns of variation in a sample of genetic data…
Weak Convergence of Non-neutral Genealogies to Kingman's Coalescent
Suzie Brown, Paul A. Jenkins, Adam M. Johansen +1
Interacting particle systems undergoing repeated mutation and selection steps model genetic evolution, and also describe a broad class of sequential Monte Carlo methods. The geneal…
Flexible Bayesian inference for diffusion processes using splines
Paul A. Jenkins, Murray Pollock, Gareth O. Roberts
We introduce a flexible method to simultaneously infer both the drift and volatility functions of a discretely observed scalar diffusion. We introduce spline bases to represent the…
Diffusion Limits at Small Times for Coalescent Processes with Mutation and Selection
Philip A. Hanson, Paul A. Jenkins, Jere Koskela +1
The Ancestral Selection Graph (ASG) is an important genealogical process which extends the well-known Kingman coalescent to incorporate natural selection. We show that the number o…
KwARG: Parsimonious reconstruction of ancestral recombination graphs with recurrent mutation
Anastasia Ignatieva, Rune B. Lyngsø, Paul A. Jenkins +1
The reconstruction of possible histories given a sample of genetic data in the presence of recombination and recurrent mutation is a challenging problem, but can provide key insigh…