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q-bio.QM2012
CSA: Comprehensive comparison of pairwise protein structure alignments
Inken Wohlers, Noël Malod-Dognin, Rumen Andonov +1
CSA is a web server for the comprehensive comparison of pairwise protein structure alignments. Its exact alignment engine computes either optimal, top-scoring alignments or heurist…
q-bio.QM2011★ 13 cited
Algorithm engineering for optimal alignment of protein structure distance matrices
Inken Wohlers, Rumen Andonov, Gunnar W. Klau
Protein structural alignment is an important problem in computational biology. In this paper, we present first successes on provably optimal pairwise alignment of protein inter-res…