239 citations · 280 across the 15 of their papers we have counts for
15 papers
Bayesian Modeling and Prediction of Generalized Contact Matrices
Shozen Dan, David A. van Dyk, Zhi Ling +2
Social contact matrices are essential tools in infectious disease epidemiology as they quantify close-range human contact patterns which directly drive the transmission of airborne…
Towards pandemic preparedness: ability to estimate high-resolution social contact patterns from longitudinal surveys
Shozen Dan, Joshua Tegegne, Yu Chen +5
Social contact surveys are an important tool to assess infection risks within populations, and the effect of non-pharmaceutical interventions on social behaviour during disease out…
Sources of HIV infections among MSM with a migration background: a viral phylogenetic case study in Amsterdam, the Netherlands
Alexandra Blenkinsop, Nikos Pantazis, Evangelia Georgia Kostaki +8
Background: Men and women with a migration background comprise an increasing proportion of incident HIV cases across Western Europe. Several studies indicate a substantial proporti…
Bayesian mixture models for phylogenetic source attribution from consensus sequences and time since infection estimates
Alexandra Blenkinsop, Lysandros Sofocleous, Francesco Di Lauro +8
In stopping the spread of infectious diseases, pathogen genomic data can be used to reconstruct transmission events and characterize population-level sources of infection. Most app…
Inferring HIV Transmission Patterns from Viral Deep-Sequence Data via Latent Typed Point Processes
Fan Bu, Joseph Kagaayi, Kate Grabowski +2
Viral deep-sequencing data play a crucial role toward understanding disease transmission network flows, because the higher resolution of these data compared to standard Sanger sequ…
Estimating fine age structure and time trends in human contact patterns from coarse contact data: the Bayesian rate consistency model
Shozen Dan, Yu Chen, Yining Chen +5
Since the emergence of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), many contact surveys have been conducted to measure changes in human interactions in the face o…