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cond-mat.soft2025

Cell Shape Emerges from Motion

Gautham Gopinath, Emmanuel Y. Mintah, Aashrith Saraswathibhatla +6

We perform cell segmentation on images from experimental studies of confluent, mobile cells in epithelial monolayers and show that these systems possess a broad, positively-skewed…

q-bio.GN2025

SCUDDO: An unsupervised clustering algorithm for single-cell Hi-C maps using diagonal diffusion operators

Luka Maisuradze, Corey S. O'Hern, Mark D. Shattuck

Motivation: Advances in high-throughput chromatin conformation capture have provided insight into the three-dimensional structure and organization of chromatin. While bulk Hi-C exp…

cond-mat.soft2025

Particle-scale origin of quadrupolar non-affine displacement fields in granular solids

Evan P. Willmarth, Weiwei Jin, Dong Wang +4

In this work, we identify the local structural defects that control the non-affine displacement fields in jammed disk packings subjected to athermal, quasistatic (AQS) simple shear…

cond-mat.soft2025

Evolution of Adaptive Force Chains in Reconfigurable Granular Metamaterials

Sven Witthaus, Atoosa Parsa, Dong Wang +7

Under an externally applied load, granular packings form force chains that depend on the contact network and moduli of the grains. In this work, we investigate packings of variable…

cond-mat.soft2025

Tuning the Size and Stiffness of Inflatable Particles

Nidhi Pashine, Dong Wang, Robert Baines +4

We describe size-varying cylindrical particles made from silicone elastomers that can serve as building blocks for robotic granular materials. The particle size variation, which is…