85 citations · 123 across the 4 of their papers we have counts for
4 papers
Insights into elastic properties of coarse-grained DNA models: q-stiffness of cgDNA vs. cgDNA+
Wout Laeremans, Midas Segers, Aderik Voorspoels +2
Coarse-grained models have emerged as valuable tools to simulate long DNA molecules while maintaining computational efficiency. These models aim at preserving interactions among co…
Breakdown of thermodynamic equilibrium for DNA hybridization in microarrays
J. Hooyberghs, M. Baiesi, A. Ferrantini +1
Test experiments of hybridization in DNA microarrays show systematic deviations from the equilibrium isotherms. We argue that these deviations are due to the presence of a partiall…
The effects of mismatches on hybridization in DNA microarrays: determination of nearest neighbor parameters
J. Hooyberghs, P. Van Hummelen, E. Carlon
Quantifying interactions in DNA microarrays is of central importance for a better understanding of their functioning. Hybridization thermodynamics for nucleic acid strands in aqueo…
Linear model for fast background subtraction in oligonucleotide microarrays
K. Myriam Kroll, Gerard T. Barkema, Enrico Carlon
One important preprocessing step in the analysis of microarray data is background subtraction. In high-density oligonucleotide arrays this is recognized as a crucial step for the g…