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Generative Enzyme Design Guided by Functionally Important Sites and Small-Molecule Substrates
Zhenqiao Song, Yunlong Zhao, Wenxian Shi +3
Enzymes are genetically encoded biocatalysts capable of accelerating chemical reactions. How can we automatically design functional enzymes? In this paper, we propose EnzyGen, an a…
Joint Design of Protein Sequence and Structure based on Motifs
Zhenqiao Song, Yunlong Zhao, Yufei Song +3
Designing novel proteins with desired functions is crucial in biology and chemistry. However, most existing work focus on protein sequence design, leaving protein sequence and stru…
Functional Geometry Guided Protein Sequence and Backbone Structure Co-Design
Zhenqiao Song, Yunlong Zhao, Wenxian Shi +2
Proteins are macromolecules responsible for essential functions in almost all living organisms. Designing reasonable proteins with desired functions is crucial. A protein's sequenc…