46 citations · 74 across the 4 of their papers we have counts for
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q-bio.GN2026
Fast Iteration of Spaced k-mers
Lucas Czech
Background: Short sequence substrings of a fixed length k, called k-mers, are a ubiquitous computational primitive in bioinformatics, used across sequence indexing, read mapping, g…
q-bio.GN2021★ 27 cited
grenepipe: A flexible, scalable, and reproducible pipeline to automate variant and frequency calling from sequence reads
Lucas Czech, Moises Exposito-Alonso
Processing high-throughput DNA sequencing data of individuals or populations requires stringing together independent software tools with many parameters, often leading to non-repro…