46 citations · 74 across the 4 of their papers we have counts for
4 papers
Fast Iteration of Spaced k-mers
Lucas Czech
Background: Short sequence substrings of a fixed length k, called k-mers, are a ubiquitous computational primitive in bioinformatics, used across sequence indexing, read mapping, g…
grenedalf: population genetic statistics for the next generation of pool sequencing
Lucas Czech, Jeffrey P. Spence, Moisés Expósito-Alonso
Pool sequencing is an efficient method for capturing genome-wide allele frequencies from multiple individuals, with broad applications such as studying adaptation in Evolve-and-Res…
Metagenomic Analysis using Phylogenetic Placement -- A Review of the First Decade
Lucas Czech, Alexandros Stamatakis, Micah Dunthorn +1
Phylogenetic placement refers to a family of tools and methods to analyze, visualize, and interpret the tsunami of metagenomic sequencing data generated by high-throughput sequenci…
grenepipe: A flexible, scalable, and reproducible pipeline to automate variant and frequency calling from sequence reads
Lucas Czech, Moises Exposito-Alonso
Processing high-throughput DNA sequencing data of individuals or populations requires stringing together independent software tools with many parameters, often leading to non-repro…