36 citations · 179 across the 13 of their papers we have counts for
3 papers · 1 filter
Minimal Cylinder Analysis Reveals the Mechanical Properties of Oncogenic Nucleosomes
Mary Pitman, Yamini Dalal, Garegin A. Papoian
Histone variants regulate replication, transcription, DNA damage repair, and chromosome segregation. Though widely accepted as a paradigm, it has not been rigorously demonstrated t…
Quantifying Dissipation in Actomyosin Networks
Carlos Floyd, Garegin A. Papoian, Christopher Jarzynski
Quantifying entropy production in various active matter phases will open new avenues for probing self-organization principles in these far-from-equilibrium systems. It has been hyp…
A Discrete Approximation to Gibbs Free Energy of Chemical Reactions is Needed for Accurately Calculating Entropy Production in Mesoscopic Simulations
Carlos Floyd, Garegin A. Papoian, Christopher Jarzynski
In modeling the interior of cells by simulating a reaction-diffusion master equation over a grid of compartments, one employs the assumption that the copy numbers of various chemic…