activity
20062023
most citedApproximation and inference methods for stochastic biochemical kinetics - a tutorial review

341 citations · 1.7k across the 37 of their papers we have counts for

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Showing 2014Show all

5 papers · 1 filter

cond-mat.stat-mech2014★ 38 cited

Approximate probability distributions of the master equation

Philipp Thomas, Ramon Grima

Master equations are common descriptions of mesoscopic systems. Analytical solutions to these equations can rarely be obtained. We here derive an analytical approximation of the ti…

cond-mat.stat-mech2014★ 22 cited

System size expansion using Feynman rules and diagrams

Philipp Thomas, Christian Fleck, Ramon Grima +1

Few analytical methods exist for quantitative studies of large fluctuations in stochastic systems. In this article, we develop a simple diagrammatic approach to the Chemical Master…

q-bio.QM2014★ 60 cited

Noise-induced multistability in chemical systems: Discrete vs Continuum modeling

Andrew Duncan, Shuohao Liao, Tomas Vejchodsky +2

The noisy dynamics of chemical systems is commonly studied using either the chemical master equation (CME) or the chemical Fokker-Planck equation (CFPE). The latter is a continuum…

q-bio.QM2014★ 59 cited

The complex chemical Langevin equation

David Schnoerr, Guido Sanguinetti, Ramon Grima

The chemical Langevin equation (CLE) is a popular simulation method to probe the stochastic dynamics of chemical systems. The CLE's main disadvantage is its break down in finite ti…

q-bio.MN2014★ 56 cited

Validity conditions for moment closure approximations in stochastic chemical kinetics

David Schnoerr, Guido Sanguinetti, Ramon Grima

Approximations based on moment-closure (MA) are commonly used to obtain estimates of the mean molecule numbers and of the variance of fluctuations in the number of molecules of che…