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physics.bio-ph2016
Thermodynamics of a Simple Three-Dimensional DNA Hairpin Model
Kellan Kremer, Kyle Jensen, Erin Boggess +6
We characterize the equation of state for a simple three-dimensional DNA hairpin model using a Metropolis Monte Carlo algorithm. This algorithm was run at constant temperature and…
physics.bio-ph2012
Kinetic Pathways of the DNA Melting Transition
Aaron Santos, William Klein
We investigate kinetic pathways of the DNA melting transition using variable-range versions of the Poland-Scheraga (PS) and Peyrard-Dauxois-Bishop (PDB) models of DNA. In the PS mo…