3 papers
physics.bio-ph2016
Thermodynamics of a Simple Three-Dimensional DNA Hairpin Model
Kellan Kremer, Kyle Jensen, Erin Boggess +6
We characterize the equation of state for a simple three-dimensional DNA hairpin model using a Metropolis Monte Carlo algorithm. This algorithm was run at constant temperature and…
physics.bio-ph2012
Kinetic Pathways of the DNA Melting Transition
Aaron Santos, William Klein
We investigate kinetic pathways of the DNA melting transition using variable-range versions of the Poland-Scheraga (PS) and Peyrard-Dauxois-Bishop (PDB) models of DNA. In the PS mo…
cond-mat.other2006
Kinetics of the Melting Transition in DNA
Aaron Santos, William Klein
We investigate the kinetics of the DNA melting transition using modified versions of the Peyrard-Dauxois-Bishop and Poland-Scheraga models that include long and short range interac…