76 citations · 351 across the 16 of their papers we have counts for
5 papers · 1 filter
Exact -values for global network alignments via combinatorial analysis of shared GO terms (Subtitle: REFANGO: Rigorous Evaluation of Functional Alignments of Networks using Gene Ontology)
Wayne B. Hayes
Network alignment aims to uncover topologically similar regions in the protein-protein interaction (PPI) networks of two or more species under the assumption that topologically sim…
An introductory guide to aligning networks using SANA, the Simulated Annealing Network Aligner
Wayne B. Hayes
Sequence alignment has had an enormous impact on our understanding of biology, evolution, and disease. The alignment of biological {\em networks} holds similar promise. Biological…
SANA: separating the search algorithm from the objective function in biological network alignment, Part 1: Search
Dillon P. Kanne, Wayne B. Hayes
Biological network alignment is currently in a state of disarray, with more than two dozen network alignment tools having been introduced in the past decade, with no clear winner,…
SANA NetGO: A combinatorial approach to using Gene Ontology (GO) terms to score network alignments
Wayne B. Hayes, Nil Mamano
Gene Ontology (GO) terms are frequently used to score alignments between protein-protein interaction (PPI) networks. Methods exist to measure the GO similarity between two proteins…
SANA: Simulated Annealing Network Alignment Applied to Biological Networks
Nil Mamano, Wayne Hayes
The alignment of biological networks has the potential to teach us as much about biology and disease as has sequence alignment. Sequence alignment can be optimally solved in polyno…