57 citations · 97 across the 7 of their papers we have counts for
9 papers
Exact -values for global network alignments via combinatorial analysis of shared GO terms (Subtitle: REFANGO: Rigorous Evaluation of Functional Alignments of Networks using Gene Ontology)
Wayne B. Hayes
Network alignment aims to uncover topologically similar regions in the protein-protein interaction (PPI) networks of two or more species under the assumption that topologically sim…
An introductory guide to aligning networks using SANA, the Simulated Annealing Network Aligner
Wayne B. Hayes
Sequence alignment has had an enormous impact on our understanding of biology, evolution, and disease. The alignment of biological {\em networks} holds similar promise. Biological…
No cell left behind: automated physics-based tracking of {\em every} cell in a dense and growing colony
Huy Pham, Emile Ramez Shehada, Shawna Stahlheber +1
A human watching a video of closely-packed cells can generally identify every individual cell, regardless of density and noise, but most currently-available cell-tracking software…
SANA: separating the search algorithm from the objective function in biological network alignment, Part 1: Search
Dillon P. Kanne, Wayne B. Hayes
Biological network alignment is currently in a state of disarray, with more than two dozen network alignment tools having been introduced in the past decade, with no clear winner,…
Galaxy Zoo and SpArcFiRe: Constraints on spiral arm formation mechanisms from spiral arm number and pitch angles
Ross E. Hart, Steven P. Bamford, Wayne B. Hayes +7
In this paper we study the morphological properties of spiral galaxies, including measurements of spiral arm number and pitch angle. Using Galaxy Zoo 2, a stellar mass-complete sam…
Graphettes: Constant-time determination of graphlet and orbit identity including (possibly disconnected) graphlets up to size 8
Adib Hassan, Po-Chien Chung, Wayne B. Hayes
Graphlets are small connected induced subgraphs of a larger graph . Graphlets are now commonly used to quantify local and global topology of networks in the field. Methods exist…