498 citations · 3.5k across the 66 of their papers we have counts for
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The power of being explicit: demystifying work, heat, and free energy in the physics of computation
Thomas E Ouldridge, Rory A. Brittain, Pieter Rein ten Wolde
Interest in the thermodynamics of computation has revived in recent years, driven by developments in science, economics and technology. Given the consequences of the growing demand…
Biochemical Szilard engines for memory-limited inference
Rory A. Brittain, Nick S. Jones, Thomas E. Ouldridge
By developing and leveraging an explicit molecular realisation of a measurement-and-feedback-powered Szilard engine, we investigate the extraction of work from complex environments…
Physical Limitations of Work Extraction from Temporal Correlations
Elan Stopnitzky, Susanne Still, Thomas E. Ouldridge +1
Recently proposed information-exploiting systems designed to extract work from a single heat bath utilize temporal correlations on an input tape. We study how enforcing time-contin…
Non-equilibrium correlations in minimal dynamical models of polymer copying
Jenny Poulton, Pieter Rein ten Wolde, Thomas E Ouldridge
Living systems produce "persistent" copies of information-carrying polymers, in which template and copy sequences remain correlated after physically decoupling. We identify a gener…
Coarse-Grained Simulation of DNA using LAMMPS
Oliver Henrich, Yair Augusto Gutierrez-Fosado, Tine Curk +1
During the last decade coarse-grained nucleotide models have emerged that allow us to DNA and RNA on unprecedented time and length scales. Among them is oxDNA, a coarse-grained, se…