498 citations · 3.5k across the 66 of their papers we have counts for
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cond-mat.soft2009★ 199 cited
DNA nanotweezers studied with a coarse-grained model of DNA
Thomas E. Ouldridge, Ard A. Louis, Jonathan P. K. Doye
We introduce a coarse-grained rigid nucleotide model of DNA that reproduces the basic thermodynamics of short strands: duplex hybridization, single-stranded stacking and hairpin fo…
cond-mat.soft2009★ 51 cited
Extracting bulk properties of self-assembling systems from small simulations
Thomas E. Ouldridge, Ard A. Louis, Jonathan P. K. Doye
For systems that self assemble into finite-sized objects, it is sometimes convenient to compute the thermodynamics for a small system where a single assembly can form. However, we…