144 citations · 144 across the 2 of their papers we have counts for
4 papers
Comment on "A generalized Langevin formalism of complete DNA melting transition"
Titus S. van Erp, Santiago Cuesta-Lopez, Johannes-Geert Hagmann +1
We show that the calculated DNA denaturation curves for finite (Peyrard-Bishop-Dauxois (PBD) chains are intrinsically undefined.
Reaction rate calculation by parallel path swapping
Titus S. van Erp
The efficiency of path sampling simulations can be improved considerably using the approach of path swapping. For this purpose, we have devised a new algorithmic procedure based on…
Can one predict DNA Transcription Start Sites by studying bubbles?
Titus S. van Erp, Santiago Cuesta-Lopez, Johannes-Geert Hagmann +1
It has been speculated that bubble formation of several base-pairs due to thermal fluctuations is indicatory for biological active sites. Recent evidence, based on experiments and…
Rate constants for diffusive processes by partial path sampling
Daniele Moroni, Peter G. Bolhuis, Titus S. van Erp
We introduce a path sampling method for the computation of rate constants for systems with a highly diffusive character. Based on the recently developed algorithm of transition int…