66 citations · 302 across the 15 of their papers we have counts for
15 papers
Dimensional criterion for forecasting nonlinear systems by reservoir computing
Pauliina Kärkkäinen, Riku Linna
Reservoir computers (RC) have proven useful as surrogate models in forecasting and replicating systems of chaotic dynamics. The quality of surrogate models based on RCs is cruciall…
Dynamics of driven translocation of semiflexible polymers
Pauli M. Suhonen, Riku P. Linna
We study translocation of semiflexible polymers driven by force inside a nanometer-scale pore using our three-dimensional Langevin dynamics model. We show that the translocat…
Rigidity-induced scale invariance in polymer ejection from capsid
Riku P. Linna, Pauli M. Suhonen, Joonas Piili
While the dynamics of a fully flexible polymer ejecting a capsid through a nanopore has been extensively studied, the ejection dynamics of semiflexible polymers has not been proper…
Quantification of tension to explain bias dependence of driven polymer translocation dynamics
P. M. Suhonen, J. Piili, R. P. Linna
Motivated by identifying the origin of the bias dependence of tension propagation we investigate methods for measuring tension propagation quantitatively in computer simulations of…
Uniform description of polymer ejection dynamics from capsid with and without hydrodynamics
Joonas Piili, Pauli M. Suhonen, Riku P. Linna
We use stochastic rotation dynamics to examine the dynamics of the ejection of an initially strongly confined flexible polymer from a spherical capsid with and without hydrodynamic…
Driven polymer translocation in good and bad solvent: effects of hydrodynamics and tension propagation
Jaakko E. Moisio, Joonas Piili, Riku P. Linna
We investigate the driven polymer translocation through a nanometer-scale pore in the presence and absence of hydrodynamics both in good and bad solvent. We present our results on…