33 citations · 40 across the 8 of their papers we have counts for
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q-bio.QM2019★ 4 cited
Scaling methods for accelerating kinetic Monte Carlo simulations of chemical reaction networks
Yen Ting Lin, Song Feng, William S. Hlavacek
Various kinetic Monte Carlo algorithms become inefficient when some of the population sizes in a system are large, which gives rise to a large number of reaction events per unit ti…
q-bio.QM2018
Generalizing Gillespie's direct method to enable network-free simulations
Ryan Suderman, Eshan D. Mitra, Yen Ting Lin +3
Gillespie's direct method for stochastic simulation of chemical kinetics is a staple of computational systems biology research. However, the algorithm requires explicit enumeration…