33 citations · 35 across the 3 of their papers we have counts for
3 papers
q-bio.QM2018
Generalizing Gillespie's direct method to enable network-free simulations
Ryan Suderman, Eshan D. Mitra, Yen Ting Lin +3
Gillespie's direct method for stochastic simulation of chemical kinetics is a staple of computational systems biology research. However, the algorithm requires explicit enumeration…
q-bio.MN2017★ 33 cited
Efficient analysis of stochastic gene dynamics in the non-adiabatic regime using piecewise deterministic Markov processes
Yen Ting Lin, Nicolas E. Buchler
Single-cell experiments show that gene expression is stochastic and bursty, a feature that can emerge from slow switching between promoter states with different activities. One sou…
cond-mat.stat-mech2009★ 2 cited
The Harmonic Measure for critical Potts clusters
David A. Adams, Yen Ting Lin, Leonard M. Sander +1
We present a technique, which we call "etching," which we use to study the harmonic measure of Fortuin-Kasteleyn clusters in the Q-state Potts model for Q=1-4. The harmonic measure…