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Quantifying the difference between phylogenetic diversity and diversity indices
Magnus Bordewich, Charles Semple
Phylogenetic diversity is a popular measure for quantifying the biodiversity of a collection of species, while phylogenetic diversity indices provide a way to apportion phyloge…
On the Complexity of Optimising Variants of Phylogenetic Diversity on Phylogenetic Networks
Magnus Bordewich, Charles Semple, Kristina Wicke
Phylogenetic Diversity (PD) is a prominent quantitative measure of the biodiversity of a collection of present-day species (taxa). This measure is based on the evolutionary distanc…
Quarnet inference rules for level-1 networks
Katharine T. Huber, Vincent Moulton, Charles Semple +1
An important problem in phylogenetics is the construction of phylogenetic trees. One way to approach this problem, known as the supertree method, involves inferring a phylogenetic…
Quantifying the Extent of Lateral Gene Transfer Required to Avert a `Genome of Eden'
Leo van Iersel, Charles Semple, Mike Steel
The complex pattern of presence and absence of many genes across different species provides tantalising clues as to how genes evolved through the processes of gene genesis, gene lo…