3 papers
cs.LG2024
Memory makes computation universal, remember?
Erik Garrison
Recent breakthroughs in AI capability have been attributed to increasingly sophisticated architectures and alignment techniques, but a simpler principle may explain these advances:…
cs.DS2024
Popping Bubbles in Pangenome Graphs
Njagi Mwaniki, Erik Garrison, Nadia Pisanti
In this paper, we introduce flubbles, a new definition of "bubbles" corresponding to variants in a (pan)genome graph . We then show a characterization for flubbles in terms of e…
q-bio.GN2024
wgatools: an ultrafast toolkit for manipulating whole genome alignments
Wenjie Wei, Songtao Gui, Jian Yang +3
Summary: With the rapid development of long-read sequencing technologies, the era of individual complete genomes is approaching. We have developed wgatools, a cross-platform, ultra…