10 citations · 14 across the 4 of their papers we have counts for
4 papers
Memory makes computation universal, remember?
Erik Garrison
Recent breakthroughs in AI capability have been attributed to increasingly sophisticated architectures and alignment techniques, but a simpler principle may explain these advances:…
Popping Bubbles in Pangenome Graphs
Njagi Mwaniki, Erik Garrison, Nadia Pisanti
In this paper, we introduce flubbles, a new definition of "bubbles" corresponding to variants in a (pan)genome graph . We then show a characterization for flubbles in terms of e…
wgatools: an ultrafast toolkit for manipulating whole genome alignments
Wenjie Wei, Songtao Gui, Jian Yang +3
Summary: With the rapid development of long-read sequencing technologies, the era of individual complete genomes is approaching. We have developed wgatools, a cross-platform, ultra…
Rapid GPU-Based Pangenome Graph Layout
Jiajie Li, Jan-Niklas Schmelzle, Yixiao Du +6
Computational Pangenomics is an emerging field that studies genetic variation using a graph structure encompassing multiple genomes. Visualizing pangenome graphs is vital for under…