2 citations · 2 across the 1 of their papers we have counts for
2 papers
cs.DS2022★ 2 cited
Fast Exact String to D-Texts Alignments
Njagi Moses Mwaniki, Erik Garrison, Nadia Pisanti
In recent years, aligning a sequence to a pangenome has become a central problem in genomics and pangenomics. A fast and accurate solution to this problem can serve as a toolkit to…
cs.DS2018
Haplotype-aware graph indexes
Jouni Sirén, Erik Garrison, Adam M. Novak +2
The variation graph toolkit (VG) represents genetic variation as a graph. Each path in the graph is a potential haplotype, though most paths are unlikely recombinations of true hap…