3 citations · 6 across the 4 of their papers we have counts for
4 papers · 1 filter
General Multimodal Protein Design Enables DNA-Encoding of Chemistry
Jarrid Rector-Brooks, Théophile Lambert, Marta Skreta +15
Evolution is an extraordinary engine for enzymatic diversity, yet the chemistry it has explored remains a narrow slice of what DNA can encode. Deep generative models can design new…
Branched Schrödinger Bridge Matching
Sophia Tang, Yinuo Zhang, Alexander Tong +1
Predicting the intermediate trajectories between an initial and target distribution is a central problem in generative modeling. Existing approaches, such as flow matching and Schr…
Gumbel-Softmax Flow Matching with Straight-Through Guidance for Controllable Biological Sequence Generation
Sophia Tang, Yinuo Zhang, Alexander Tong +1
Flow matching in the continuous simplex has emerged as a promising strategy for DNA sequence design, but struggles to scale to higher simplex dimensions required for peptide and pr…
Path Planning for Masked Diffusion Model Sampling
Fred Zhangzhi Peng, Zachary Bezemek, Sawan Patel +5
Any order generation of discrete data using masked diffusion models (MDMs) offers a compelling alternative to traditional autoregressive models, especially in domains that lack a n…