239 citations · 996 across the 29 of their papers we have counts for
6 papers · 1 filter
On the structural properties of small-world networks with finite range of shortcut links
Tao Jia, Rahul V. Kulkarni
We explore a new variant of Small-World Networks (SWNs), in which an additional parameter () sets the length scale over which shortcuts are uniformly distributed. When we…
Connecting protein and mRNA burst distributions for stochastic models of gene expression
Vlad Elgart, Tao Jia, Andrew T. Fenley +1
The intrinsic stochasticity of gene expression can lead to large variability in protein levels for genetically identical cells. Such variability in protein levels can arise from in…
Regulation by small RNAs via coupled degradation: mean-field and variational approaches
Thierry Platini, Tao Jia, Rahul V. Kulkarni
Regulatory genes called small RNAs (sRNAs) are known to play critical roles in cellular responses to changing environments. For several sRNAs, regulation is effected by coupled sto…
Stochastic modeling of regulation of gene expression by multiple small RNAs
Charles Baker, Tao Jia, Rahul V. Kulkarni
A wealth of new research has highlighted the critical roles of small RNAs (sRNAs) in diverse processes such as quorum sensing and cellular responses to stress. The pathways control…
Computational modeling of differences in the quorum sensing induced luminescence phenotypes of \textit{Vibrio harveyi} and \textit{Vibrio cholerae}
Andrew T Fenley, Suman K Banik, Rahul V Kulkarni
\textit{Vibrio harveyi} and \textit{Vibrio cholerae} have quorum sensing pathways with similar design and highly homologous components including multiple small RNAs (sRNAs). Howeve…
Intrinsic noise in stochastic models of gene expression with molecular memory and bursting
Tao Jia, Rahul V. Kulkarni
Regulation of intrinsic noise in gene expression is essential for many cellular functions. Correspondingly, there is considerable interest in understanding how different molecular…