4 papers
Analog computation with transcriptional networks
David Doty, Mina Latifi, David Soloveichick
Transcriptional networks represent one of the most extensively studied types of systems in synthetic biology. Although the completeness of transcriptional networks for digital logi…
Exactly simulating stochastic chemical reaction networks in sub-constant time per reaction
Joshua Petrack, David Doty
The model of chemical reaction networks is among the oldest and most widely studied and used in natural science. The model describes reactions among abstract chemical species, for…
Robust predicate and function computation in continuous chemical reaction networks
Kim Calabrese, David Doty, Mina Latifi
We initiate the study of rate-constant-independent computation of Boolean predicates and numerical functions in the continuous model of chemical reaction networks (CRNs), which mod…
The computational power of discrete chemical reaction networks with bounded executions
David Doty, Ben Heckmann
Chemical reaction networks (CRNs) model systems where molecules interact according to a finite set of reactions such as , representing that if a molecule of and $B…