20 citations · 132 across the 38 of their papers we have counts for
49 papers
Harvesting Brownian Motion: Zero Energy Computational Sampling
David Doty, Niels Kornerup, Austin Luchsinger +3
The key factor currently limiting the advancement of computational power of electronic computation is no longer the manufacturing density and speed of components, but rather their…
Optimal Information Encoding in Chemical Reaction Networks
Austin Luchsinger, David Doty, David Soloveichik
Discrete chemical reaction networks formalize the interactions of molecular species in a well-mixed solution as stochastic events. Given their basic mathematical and physical role,…
Thermodynamically Driven Signal Amplification
Joshua Petrack, David Soloveichik, David Doty
The field of chemical computation attempts to model computational behavior that arises when molecules, typically nucleic acids, are mixed together. Thermodynamic binding networks (…
Dynamic size counting in population protocols
David Doty, Mahsa Eftekhari
The population protocol model describes a network of anonymous agents that interact asynchronously in pairs chosen at random. Each agent starts in the same initial state . We in…
Rate-Independent Computation in Continuous Chemical Reaction Networks
Ho-Lin Chen, David Doty, Wyatt Reeves +1
Coupled chemical interactions in a well-mixed solution are commonly formalized as chemical reaction networks (CRNs). However, despite the widespread use of CRNs in the natural scie…
ppsim: A software package for efficiently simulating and visualizing population protocols
David Doty, Eric Severson
We introduce ppsim, a software package for efficiently simulating population protocols, a widely-studied subclass of chemical reaction networks (CRNs) in which all reactions have t…