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Equivariant Asynchronous Diffusion: An Adaptive Denoising Schedule for Accelerated Molecular Conformation Generation
Junyi An, Chao Qu, Yun-Fei Shi +3
Recent 3D molecular generation methods primarily use asynchronous auto-regressive or synchronous diffusion models. While auto-regressive models build molecules sequentially, they'r…
Guiding Diffusion Models with Reinforcement Learning for Stable Molecule Generation
Zhijian Zhou, Junyi An, Zongkai Liu +5
Generating physically realistic 3D molecular structures remains a core challenge in molecular generative modeling. While diffusion models equipped with equivariant neural networks…
Equivariant Spherical Transformer for Efficient Molecular Modeling
Junyi An, Xinyu Lu, Chao Qu +6
Equivariant Graph Neural Networks (GNNs) have significantly advanced the modeling of 3D molecular structure by leveraging group representations. However, their message passing, hea…
Equivariant Masked Position Prediction for Efficient Molecular Representation
Junyi An, Chao Qu, Yun-Fei Shi +4
Graph neural networks (GNNs) have shown considerable promise in computational chemistry. However, the limited availability of molecular data raises concerns regarding GNNs' ability…