9 papers
Beyond Classification: Pathology Foundation Models as Detection Encoders for Mitotic Figures
Sweta Banerjee, Alireza Teimoury, Nils Porsche +11
Pathology foundation models (FMs) are models trained on vast amounts of typically unlabeled data and have been shown to yield regularized latent spaces that can be used effectively…
Decomposition Sampling for Efficient Region Annotations in Active Learning
Jingna Qiu, Frauke Wilm, Mathias Öttl +5
Active learning improves annotation efficiency by selecting the most informative samples for annotation and model training. While most prior work has focused on selecting informati…
Dataset creation for supervised deep learning-based analysis of microscopic images -- review of important considerations and recommendations
Christof A. Bertram, Viktoria Weiss, Jonas Ammeling +6
Supervised deep learning (DL) receives great interest for automated analysis of microscopic images with an increasing body of literature supporting its potential. The development a…
SWAN -- Enabling Fast and Mobile Histopathology Image Annotation through Swipeable Interfaces
Sweta Banerjee, Timo Gosch, Sara Hester +11
The annotation of large scale histopathology image datasets remains a major bottleneck in developing robust deep learning models for clinically relevant tasks, such as mitotic figu…
Effortless Vision-Language Model Specialization in Histopathology without Annotation
Jingna Qiu, Nishanth Jain, Jonas Ammeling +2
Recent advances in Vision-Language Models (VLMs) in histopathology, such as CONCH and QuiltNet, have demonstrated impressive zero-shot classification capabilities across various ta…
Benchmarking Foundation Models for Mitotic Figure Classification
Jonas Ammeling, Jonathan Ganz, Emely Rosbach +4
The performance of deep learning models is known to scale with data quantity and diversity. In pathology, as in many other medical imaging domains, the availability of labeled imag…
HASD: Hierarchical Adaption for pathology Slide-level Domain-shift
Jingsong Liu, Han Li, Chen Yang +6
Domain shift is a critical problem for pathology AI as pathology data is heavily influenced by center-specific conditions. Current pathology domain adaptation methods focus on imag…
Benchmarking Deep Learning and Vision Foundation Models for Atypical vs. Normal Mitosis Classification with Cross-Dataset Evaluation
Sweta Banerjee, Viktoria Weiss, Taryn A. Donovan +9
Atypical mitosis marks a deviation in the cell division process that has been shown be an independent prognostic marker for tumor malignancy. However, atypical mitosis classificati…
Dataset Distillation with Probabilistic Latent Features
Zhe Li, Sarah Cechnicka, Cheng Ouyang +3
As deep learning models grow in complexity and the volume of training data increases, reducing storage and computational costs becomes increasingly important. Dataset distillation…