8 citations · 15 across the 11 of their papers we have counts for
4 papers · 1 filter
ResearchClawBench: A Benchmark for End-to-End Autonomous Scientific Research
Wanghan Xu, Shuo Li, Tianlin Ye +48
AI coding agents are increasingly used for scientific work, but their end-to-end autonomous research capability remains difficult to verify. We present ResearchClawBench, a benchma…
Bidirectional Representations Augmented Autoregressive Biological Sequence Generation
Xiang Zhang, Jiaqi Wei, Zijie Qiu +5
Autoregressive (AR) models, common in sequence generation, are limited in many biological tasks such as de novo peptide sequencing and protein modeling by their unidirectional natu…
Universal Biological Sequence Reranking for Improved De Novo Peptide Sequencing
Zijie Qiu, Jiaqi Wei, Xiang Zhang +6
De novo peptide sequencing is a critical task in proteomics. However, the performance of current deep learning-based methods is limited by the inherent complexity of mass spectrome…
On the Performance Analysis of Momentum Method: A Frequency Domain Perspective
Xianliang Li, Jun Luo, Zhiwei Zheng +5
Momentum-based optimizers are widely adopted for training neural networks. However, the optimal selection of momentum coefficients remains elusive. This uncertainty impedes a clear…