3 papers
q-bio.QM2025
Characterizing Fungal Infections in the All of Us Research Program
Md Fantacher Islam, Emeral Norzagaray, Corneliu Antonescu +1
Fungal infections, such as Coccidioidomycosis, Aspergillosis, and Histoplasmosis, represent a growing public health concern in the United States. The rising incidence of these myco…
q-bio.QM2025
SHREC: A Framework for Advancing Next-Generation Computational Phenotyping with Large Language Models
Sarah Pungitore, Shashank Yadav, Molly Douglas +2
Computational phenotyping is a central informatics activity with resulting cohorts supporting a wide variety of applications. However, it is time-intensive because of manual data r…
cs.CL2025
PHEONA: An Evaluation Framework for Large Language Model-based Approaches to Computational Phenotyping
Sarah Pungitore, Shashank Yadav, Vignesh Subbian
Computational phenotyping is essential for biomedical research but often requires significant time and resources, especially since traditional methods typically involve extensive m…