6 citations · 6 across the 4 of their papers we have counts for
4 papers
Chemical models of genetic toggle switches
Patrick B. Warren, Pieter Rein ten Wolde
We study by mean-field analysis and stochastic simulations chemical models for genetic toggle switches formed from pairs of genes that mutually repress each other. In order to dete…
Green's Function Reaction Dynamics: a new approach to simulate biochemical networks at the particle level and in time and space
Jeroen S. van Zon, Pieter Rein ten Wolde
Biochemical networks are the analog computers of life. They allow living cells to control a large number of biological processes, such as gene expression and cell signalling. In bi…
Statistical analysis of the spatial distribution of operons in the transcriptional regulation network of Escherichia coli
P. B. Warren, P. R. ten Wolde
We have performed a statistical analysis of the spatial distribution of operons in the transcriptional regulation network of Escherichia coli. The analysis reveals that operons tha…
Drying Induced Hydrophobic Polymer Collapse
Pieter Rein ten Wolde, David Chandler
We have used computer simulation to study the collapse of a hydrophobic chain in water. We find that the mechanism of collapse is much like that of a first order phase transition.…