4 papers · 1 filter
Converting Time Series Data to Numeric Representations Using Alphabetic Mapping and k-mer strategy
Sarwan Ali, Tamkanat E Ali, Imdad Ullah Khan +1
In the realm of data analysis and bioinformatics, representing time series data in a manner akin to biological sequences offers a novel approach to leverage sequence analysis techn…
Hilbert Curve Based Molecular Sequence Analysis
Sarwan Ali, Tamkanat E Ali, Imdad Ullah Khan +1
Accurate molecular sequence analysis is a key task in the field of bioinformatics. To apply molecular sequence classification algorithms, we first need to generate the appropriate…
Computing Gram Matrix for SMILES Strings using RDKFingerprint and Sinkhorn-Knopp Algorithm
Sarwan Ali, Haris Mansoor, Prakash Chourasia +2
In molecular structure data, SMILES (Simplified Molecular Input Line Entry System) strings are used to analyze molecular structure design. Numerical feature representation of SMILE…
Position Specific Scoring Is All You Need? Revisiting Protein Sequence Classification Tasks
Sarwan Ali, Taslim Murad, Prakash Chourasia +4
Understanding the structural and functional characteristics of proteins are crucial for developing preventative and curative strategies that impact fields from drug discovery to po…