activity
20212026
most citedDPPIN: A Biological Repository of Dynamic Protein-Protein Interaction Network Data

4 citations · 33 across the 27 of their papers we have counts for

collaborators

28 papers

cs.CL2026

Diagnostic Analysis for Large Language Model Reasoning

Xinyu Liu, Dongqi Fu, Jun Wu

Reasoning structures (e.g., chains and graphs) are increasingly used for probabilistic inference, factuality verification, and uncertainty estimation, but their structural reliabil…

cs.CL2026

Predict, Don't Iterate: Efficient Adaptive-Length Infilling for Diffusion Language Models

Haobo Xu, Sirui Chen, Yuanchen Bei +5

Diffusion language models (DLMs) have emerged as a promising alternative to the auto-regressive paradigm. With bidirectional attention and any-order generation, DLMs naturally fit…

cs.CL2026

Code as Agent Harness

Xuying Ning, Katherine Tieu, Dongqi Fu +39

Recent large language models (LLMs) have demonstrated strong capabilities in understanding and generating code, from competitive programming to repository-level software engineerin…

cs.AI2026

MC-Search: Evaluating and Enhancing Multimodal Agentic Search with Structured Long Reasoning Chains

Xuying Ning, Dongqi Fu, Tianxin Wei +7

With the increasing demand for step-wise, cross-modal, and knowledge-grounded reasoning, multimodal large language models (MLLMs) are evolving beyond the traditional fixed retrieve…

cs.AI2026★ 1 cited

A Survey of Agentic Reasoning for Large Language Models: Towards Recursively Self-Improving and Collective Agents

Tianxin Wei, Ting-Wei Li, Zhining Liu +26

Reasoning is a fundamental cognitive process underlying inference, problem-solving, and decision-making. While large language models (LLMs) demonstrate strong reasoning capabilitie…

cs.AI2026

TSAQA: Time Series Analysis Question And Answering Benchmark

Baoyu Jing, Sanhorn Chen, Lecheng Zheng +13

Time series data are integral to critical applications across domains such as finance, healthcare, transportation, and environmental science. While recent work has begun to explore…

cs.LG2026

OWLEYE: Zero-Shot Learner for Cross-Domain Graph Data Anomaly Detection

Lecheng Zheng, Dongqi Fu, Zihao Li +1

Graph data is informative to represent complex relationships such as transactions between accounts, communications between devices, and dependencies among machines or processes. Co…

cs.LG2025

Graph4MM: Weaving Multimodal Learning with Structural Information

Xuying Ning, Dongqi Fu, Tianxin Wei +2

Real-world multimodal data usually exhibit complex structural relationships beyond traditional one-to-one mappings like image-caption pairs. Entities across modalities interact in…

cs.LG2025

Learnable Spatial-Temporal Positional Encoding for Link Prediction

Katherine Tieu, Dongqi Fu, Zihao Li +2

Accurate predictions rely on the expressiveness power of graph deep learning frameworks like graph neural networks and graph transformers, where a positional encoding mechanism has…

cs.LG2025

Invariant Link Selector for Spatial-Temporal Out-of-Distribution Problem

Katherine Tieu, Dongqi Fu, Jun Wu +1

In the era of foundation models, Out-of- Distribution (OOD) problems, i.e., the data discrepancy between the training environments and testing environments, hinder AI generalizatio…

cs.LG2025★ 1 cited

ClimateBench-M: A Multi-Modal Climate Data Benchmark with a Simple Generative Method

Dongqi Fu, Yada Zhu, Zhining Liu +10

Climate science studies the structure and dynamics of Earth's climate system and seeks to understand how climate changes over time, where the data is usually stored in the format o…

cs.CL2025

RAG over Tables: Hierarchical Memory Index, Multi-Stage Retrieval, and Benchmarking

Jiaru Zou, Dongqi Fu, Sirui Chen +5

Retrieval-Augmented Generation (RAG) enhances Large Language Models (LLMs) by integrating them with an external knowledge base to improve the answer relevance and accuracy. In real…

cs.LG2025★ 1 cited

Language in the Flow of Time: Time-Series-Paired Texts Weaved into a Unified Temporal Narrative

Zihao Li, Xiao Lin, Zhining Liu +8

While many advances in time series models focus exclusively on numerical data, research on multimodal time series, particularly those involving contextual textual information, rema…

cs.LG2024★ 3 cited

PyG-SSL: A Graph Self-Supervised Learning Toolkit

Lecheng Zheng, Baoyu Jing, Zihao Li +9

Graph Self-Supervised Learning (SSL) has emerged as a pivotal area of research in recent years. By engaging in pretext tasks to learn the intricate topological structures and prope…

cs.LG2024★ 4 cited

APEX: Adaptive and Extreme Summarization for Personalized Knowledge Graphs

Zihao Li, Dongqi Fu, Mengting Ai +1

Knowledge graphs (KGs), which store an extensive number of relational facts, serve various applications. Recently, personalized knowledge graphs (PKGs) have emerged as a solution t…

cs.LG2024

Can Graph Neural Networks Learn Language with Extremely Weak Text Supervision?

Zihao Li, Lecheng Zheng, Bowen Jin +5

While great success has been achieved in building vision models with Contrastive Language-Image Pre-training (CLIP) over internet-scale image-text pairs, building transferable Grap…

cs.SI2024

Local Clustering on Complex Graphs and Complex Hypergraphs

Zihao Li, Dongqi Fu, Hengyu Liu +1

Local/seeded clustering aims to find a compact cluster near the given starting instances. While most existing studies on graph clustering assume a discrete graph setting (i.e., unw…

cs.LG2024★ 3 cited

PageRank Bandits for Link Prediction

Yikun Ban, Jiaru Zou, Zihao Li +5

Link prediction is a critical problem in graph learning with broad applications such as recommender systems and knowledge graph completion. Numerous research efforts have been dire…

cs.SI2024

Hypergraphs as Weighted Directed Self-Looped Graphs: Spectral Properties, Clustering, Cheeger Inequality

Zihao Li, Dongqi Fu, Hengyu Liu +1

Hypergraphs naturally arise when studying group relations and have been widely used in the field of machine learning. To the best of our knowledge, the recently proposed edge-depen…

cs.AI2024★ 2 cited

What Do LLMs Need to Understand Graphs: A Survey of Parametric Representation of Graphs

Dongqi Fu, Liri Fang, Zihao Li +3

Graphs, as a relational data structure, have been widely used for various application scenarios, like molecule design and recommender systems. Recently, large language models (LLMs…

cs.LG2024★ 2 cited

Generating Fine-Grained Causality in Climate Time Series Data for Forecasting and Anomaly Detection

Dongqi Fu, Yada Zhu, Hanghang Tong +3

Understanding the causal interaction of time series variables can contribute to time series data analysis for many real-world applications, such as climate forecasting and extreme…

cs.LG2024★ 3 cited

VCR-Graphormer: A Mini-batch Graph Transformer via Virtual Connections

Dongqi Fu, Zhigang Hua, Yan Xie +7

Graph transformer has been proven as an effective graph learning method for its adoption of attention mechanism that is capable of capturing expressive representations from complex…

cs.LG2023

Privacy-Preserving Graph Machine Learning from Data to Computation: A Survey

Dongqi Fu, Wenxuan Bao, Ross Maciejewski +2

In graph machine learning, data collection, sharing, and analysis often involve multiple parties, each of which may require varying levels of data security and privacy. To this end…

cs.LG2022★ 3 cited

MentorGNN: Deriving Curriculum for Pre-Training GNNs

Dawei Zhou, Lecheng Zheng, Dongqi Fu +2

Graph pre-training strategies have been attracting a surge of attention in the graph mining community, due to their flexibility in parameterizing graph neural networks (GNNs) witho…