9 citations · 14 across the 9 of their papers we have counts for
6 papers · 1 filter
Efficient Standardization of Clinical Notes using Large Language Models
Daniel B. Hier, Michael D. Carrithers, Thanh Son Do +1
Clinician notes are a rich source of patient information but often contain inconsistencies due to varied writing styles, colloquialisms, abbreviations, medical jargon, grammatical…
Mapping Biomedical Ontology Terms to IDs: Effect of Domain Prevalence on Prediction Accuracy
Thanh Son Do, Daniel B. Hier, Tayo Obafemi-Ajayi
This study evaluates the ability of large language models (LLMs) to map biomedical ontology terms to their corresponding ontology IDs across the Human Phenotype Ontology (HPO), Gen…
A Simplified Retriever to Improve Accuracy of Phenotype Normalizations by Large Language Models
Daniel B. Hier, Thanh Son Do, Tayo Obafemi-Ajayi
Large language models (LLMs) have shown improved accuracy in phenotype term normalization tasks when augmented with retrievers that suggest candidate normalizations based on term d…
High-Throughput Phenotyping of Clinical Text Using Large Language Models
Daniel B. Hier, S. Ilyas Munzir, Anne Stahlfeld +2
High-throughput phenotyping automates the mapping of patient signs to standardized ontology concepts and is essential for precision medicine. This study evaluates the automation of…
A Large Language Model Outperforms Other Computational Approaches to the High-Throughput Phenotyping of Physician Notes
Syed I. Munzir, Daniel B. Hier, Chelsea Oommen +1
High-throughput phenotyping, the automated mapping of patient signs and symptoms to standardized ontology concepts, is essential to gaining value from electronic health records (EH…
High Throughput Phenotyping of Physician Notes with Large Language and Hybrid NLP Models
Syed I. Munzir, Daniel B. Hier, Michael D. Carrithers
Deep phenotyping is the detailed description of patient signs and symptoms using concepts from an ontology. The deep phenotyping of the numerous physician notes in electronic healt…